Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD005125

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD005125
Description
Chr02_600,897,,,1,897,
Family
PBF-2-like
3D structure (top 5)
1L3A
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.28009
Arabidopsis thaliana ATWHY2 (A. THALIANA WHIRLY 2); DNA binding (ATWHY2) mRNA, complete cds /cds=p(32,748) /gb=NM_105795
Hv.12913
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf60h16, mRNA sequence /gb=AK249976
Mtr.14110
MEUA874TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=GE344087
Os.32450
Oryza sativa Japonica Group cDNA clone:001-039-A03, full insert sequence /cds=p(58,744) /gb=AK104768
Pba.3139
WS02548.C21_G11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02548_G11 3', mRNA sequence /clone=WS02548_G11 /clone_end=3' /gb=DT491657
Pth.3139
Populus trichocarpa clone WS0115_A07 unknown mRNA /cds=p(62,751) /gb=EF146025
Sbi.12208
OV1_27_F08.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence /gb=BG048099
Vvi.15216
WIN1148.C21_I21 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1148_I21 3', mRNA sequence /clone=WIN1148_I21 /clone_end=3' /gb=EC993493

Domain Architecture

Whirly PF08536 OsIBCD005125
DomainStartEndBit scoreE-value
Whirly121259263.73.8e-76

Sequences