Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD005986

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD005986
Description
Chr02_1896,1206,,,1,1206,
Family
C3H
3D structure (top 5)
2CSY 2F42 1Z6U 1JM7 2ECV
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.42654
Arabidopsis thaliana putative protein (At5g06420) mRNA, complete cds /cds=p(689,1825) /gb=AY136406
At.48142
Arabidopsis thaliana nucleic acid binding (AT1G01350) mRNA, complete cds /cds=p(177,1208) /gb=NM_100017
Cre.15665
Chlamydomonas reinhardtii predicted protein (CHLREDRAFT_134186) mRNA, complete cds /cds=p(1,924) /gb=XM_001696330
Hv.8921
HVSMEh0091D10f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone HVSMEh0091D10f, mRNA sequence /clone=HVSMEh0091D10f /gb=BE196046
Os.6111
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA018I20, full insert sequence /gb=CT831567
Pba.6847
WS02536.B21_E24 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02536_E24 3', mRNA sequence /clone=WS02536_E24 /clone_end=3' /gb=DT488393
Ppa.8545
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_187995) mRNA, complete cds /cds=p(168,1175) /gb=XM_001769379
Pth.6847
WS02536.B21_E24 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02536_E24 3', mRNA sequence /clone=WS02536_E24 /clone_end=3' /gb=DT488393

Domain Architecture

zf-CCCH PF00642 OsIBCD005986
DomainStartEndBit scoreE-value
zf-CCCH18821443.76.5e-10

Sequences