Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD006509

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD006509
Description
Chr02_2897,1428,,,1,1428,
Family
HSF
3D structure (top 5)
1HKS 3HTS 1C1G
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.5364
Arabidopsis thaliana HSF3 (HEAT SHOCK FACTOR 3); DNA binding / transcription factor (HSF3) mRNA, complete cds /cds=p(117,1562) /gb=NM_180501
At.5971
Arabidopsis thaliana ATHSFA1E (Arabidopsis thaliana heat shock transcription factor A1E); DNA binding / transcription factor (ATHSFA1E) mRNA, complete cds /cds=p(143,1549) /gb=NM_111169
Hv.18901
HVSMEb0008B10f Hordeum vulgare seedling shoot EST library HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp. vulgare cDNA clone HVSMEb0008B10f, mRNA sequence /clone=HVSMEb0008B10f /gb=BF628773
Os.18587
Oryza sativa Japonica Group cDNA clone:J033067M16, full insert sequence /gb=AK101824
Os.2152
Oryza sativa Japonica Group cDNA clone:002-148-G05, full insert sequence /cds=p(181,1503) /gb=AK109856
Os.59230
Oryza sativa Japonica Group cDNA clone:J013165J23, full insert sequence /gb=AK072210
Os.9717
Oryza sativa Japonica Group cDNA clone:J023088F14, full insert sequence /cds=p(126,1646) /gb=AK100430
Pba.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055
Pth.11766
F069P67Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence /gb=BI136536
Pth.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055
Vvi.23635
S9B09290 Ripening Berries (VvS9) Vitis vinifera cDNA clone S9B09290, mRNA sequence /clone=S9B09290 /gb=EE101448

Domain Architecture

HSF_DNA-bind PF00447 OsIBCD006509
DomainStartEndBit scoreE-value
HSF_DNA-bind19186211.12.7e-60

Sequences