Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD006671

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD006671
Description
Chr02_3182,1464,,,1,1464,
Family
HSF
3D structure (top 5)
1HKS 3HTS
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.45813
Arabidopsis thaliana AT-HSFA3 (Arabidopsis thaliana heat shock transcription factor A3); DNA binding / transcription factor (AT-HSFA3) mRNA, complete cds /cds=p(1,1239) /gb=NM_120453
Hv.21887
HS01H02T HS Hordeum vulgare subsp. vulgare cDNA clone HS01H02 5-PRIME, mRNA sequence /clone=HS01H02 /clone_end=5' /gb=BQ466741
Os.23778
Oryza sativa Japonica Group cDNA clone:J033073P11, full insert sequence /cds=p(81,1577) /gb=AK101934
Pba.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055
Pth.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055

Domain Architecture

HSF_DNA-bind PF00447 OsIBCD006671
DomainStartEndBit scoreE-value
HSF_DNA-bind55219202.69.4e-58

Sequences