Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD006900

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD006900
Description
Chr02_3547,1050,,,1,1050,
Family
HB
3D structure (top 5)
1B8I 2CRA 1NK2 2E1O 2CUE
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.19738
Arabidopsis thaliana clone HAT1 homeobox protein mRNA, complete cds /cds=p(148,996) /gb=U09332
At.25127
Arabidopsis thaliana HAT2; transcription factor (HAT2) mRNA, complete cds /cds=p(263,1114) /gb=NM_124108
Hv.27199
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf26g21, mRNA sequence /gb=AK249428
Mtr.1441
Medicago truncatula clone MTYFD_FE_FF_FG1G-H-17 unknown mRNA /cds=p(54,866) /gb=BT052694
Mtr.5196
AJ498394 MTPOSE Medicago truncatula cDNA clone mt--acc955204c10, mRNA sequence /clone=mt--acc955204c10 /gb=AJ498394
Os.2362
Oryza sativa Japonica Group cDNA clone:002-102-B08, full insert sequence /gb=AK064118
Os.23861
Oryza sativa Japonica Group cDNA clone:J033110O17, full insert sequence /cds=p(140,883) /gb=AK122006
Os.4605
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120M16, full insert sequence /gb=CT832945
Os.80523
Oryza sativa Japonica Group cDNA, clone: J065121H01, full insert sequence /gb=AK241196
Pba.11168
WS02528.B21_I15 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02528_I15 3', mRNA sequence /clone=WS02528_I15 /clone_end=3' /gb=DT485554
Ppa.10747
Physcomitrella patens mRNA for homeobox protein PpHB4, complete cds /cds=p(328,810) /gb=AB028075
Ppa.26054
DC945664 ppgs full-length cDNA library; green sporophytes Physcomitrella patens subsp. patens cDNA clone ppgs8n05 3', mRNA sequence /clone=ppgs8n05 /clone_end=3' /gb=DC945664
Pth.11168
WS02528.B21_I15 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02528_I15 3', mRNA sequence /clone=WS02528_I15 /clone_end=3' /gb=DT485554
Vvi.17363
WIN0812.C21_C24 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0812_C24 3', mRNA sequence /clone=WIN0812_C24 /clone_end=3' /gb=EC961649
Vvi.8463
WIN061.C21_D09 Cab Sauv seed normalized (WIN06) Vitis vinifera cDNA clone WIN061_D09 3', mRNA sequence /clone=WIN061_D09 /clone_end=3' /gb=EC956931

Domain Architecture

Homeobox PF00046 OsIBCD006900
DomainStartEndBit scoreE-value
Homeobox15320765.61.7e-16
HALZ20825265.32.1e-16

Sequences