Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD007550

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD007550
Description
Chr02_4517,1188,,,1,1188,
Family
C3H
3D structure (top 5)
3EI3 1VYH 3GFC 2VDU 3EI4
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.29648
Arabidopsis thaliana WD-40 repeat family protein / zfwd2 protein (ZFWD2), putative (AT5G51980) mRNA, complete cds /cds=p(181,1494) /gb=NM_124577
Hv.21110
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf171d02, mRNA sequence /gb=AK252654
Os.23123
Oryza sativa Japonica Group cDNA clone:J033090J15, full insert sequence /cds=p(295,1320) /gb=AK102324
Ptp.815
T003G04 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU830086
Sbi.10177
PI1_32_C10.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence /gb=BE366358
Vvi.1545
EST 3442 Veraison Grape berries Lambda Zap II Library Vitis vinifera cDNA clone TT273H07 3', mRNA sequence /clone=TT273H07 /clone_end=3' /gb=BQ794504

Domain Architecture

zf-CCCH PF00642 OsIBCD007550
DomainStartEndBit scoreE-value
zf-CCCH29534.20.39
zf-CCCH10913422.70.0014
WD4014017833.76.8e-07
WD4026329924.50.0004

Sequences