Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD007721

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD007721
Description
Chr02_4774,4995,,,1,4995,
Family
SET
3D structure (top 5)
2R3A 2RFI 1ML9 3H6L 1MVH
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.52882
Arabidopsis thaliana nucleic acid binding / transcription factor/ zinc ion binding (AT2G23740) mRNA, complete cds /cds=p(302,4429) /gb=NM_127937
Hv.21694
AU252288 salt-stressed barley root cDNA Hordeum vulgare subsp. vulgare cDNA clone BR-S25 similar to putative SET-domain transcription regulator, mRNA sequence /clone=BR-S25 /gb=AU252288
Hv.30036
HVSMEi0020G03f Hordeum vulgare 20 DAP spike EST library HVcDNA0010 (20 DAP) Hordeum vulgare subsp. vulgare cDNA clone HVSMEi0020G03f, mRNA sequence /clone=HVSMEi0020G03f /gb=BG368720
Os.47321
Oryza sativa Japonica Group cDNA clone:002-150-E07, full insert sequence /gb=AK108743
Os.54767
Oryza sativa Japonica Group cDNA clone:002-114-G07, full insert sequence /cds=p(333,1643) /gb=AK106720
Sbi.12353
PI1_51_H09.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence /gb=BE596060

Domain Architecture

Pre-SET PF05033 OsIBCD007721
DomainStartEndBit scoreE-value
Pre-SET1367149933.53.8e-07
SET150116481391.3e-38

Sequences