Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD008617

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD008617
Description
Chr03_131,5232,,,1,5232,
Family
C3H
3D structure (top 5)
2BZE 1V32 1WH2 1UHR 1V31
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

Hv.25150
BJ471970 K. Sato unpublished cDNA library, cv. Haruna Nijo adult, heading stage top three leaves Hordeum vulgare subsp. vulgare cDNA clone baal28n18 5', mRNA sequence /clone=baal28n18 /clone_end=5' /gb=BJ471970
Mtr.13307
EST647475 HOGA Medicago truncatula cDNA clone HOGA-32C15, mRNA sequence /clone=HOGA-32C15 /gb=CB894683
Os.78568
Oryza sativa (japonica cultivar-group) Os10g0511800 (Os10g0511800) mRNA, complete cds /cds=p(1,2118) /gb=NM_001071576
Os.82090
OSIIEa04L23.r OSIIEa Oryza sativa (indica cultivar-group) cDNA clone OSIIEa04L23 3', mRNA sequence /clone=OSIIEa04L23 /clone_end=3' /gb=CB619884
Os.86087
NEW_RNG123-D03 Rice mixture of leaf, root, panicle Oryza sativa (japonica cultivar-group) cDNA, mRNA sequence /gb=EE590805
Os.9553
Oryza sativa Japonica Group cDNA clone:002-107-G01, full insert sequence /gb=AK112095
Os.96422
SSH001438 Salt stress SSH library Oryza sativa (indica cultivar-group) cDNA, mRNA sequence /gb=EX451381

Domain Architecture

AT_hook PF02178 OsIBCD008617
DomainStartEndBit scoreE-value
AT_hook809290.68
SWIB29737285.22.1e-22
Plus-3436542160.93.5e-45
GYF72377634.34.4e-07
zf-CCCH1719174313.70.021

Sequences