Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD009008

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD009008
Description
Chr03_670,1155,,,1,1155,
Family
HB
3D structure (top 5)
1ZQ3 2VI6 1B72 1B8I 2CRA
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.49022
Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL16-61-C06 /cds=p(284,1228) /gb=AK229364
At.68137
987288 CERES-148 Arabidopsis thaliana cDNA clone 147623 3', mRNA sequence /clone=147623 /clone_end=3' /gb=DR380834
Hv.12185
BES1824102g23 BES1824 Hordeum vulgare subsp. vulgare cDNA clone MPMGp2010G232 5-PRIME, mRNA sequence /clone=MPMGp2010G23102 /clone_end=5' /gb=CK122216
Mtr.15423
MTYEH21TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EV261238
Mtr.17800
Medicago truncatula clone MTYF9_FA_FB_FC1G-H-4 unknown mRNA /cds=m(1,800) /gb=BT051961
Mtr.1797
EST646165 HOGA Medicago truncatula cDNA clone HOGA-27L15, mRNA sequence /clone=HOGA-27L15 /gb=CB893373
Os.49753
Oryza sativa (japonica cultivar-group) clone S14171 Hox21 (hox21) mRNA, partial cds /cds=p(1,433) /gb=AY554028
Os.59424
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN035D07, full insert sequence /gb=CT837907
Os.70514
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA049M06, full insert sequence /gb=CT837749
Pth.10856
WS01227.B21.1_E04 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01227_E04 3', mRNA sequence /clone=WS01227_E04 /clone_end=3' /gb=CV237288

Domain Architecture

Homeobox PF00046 OsIBCD009008
DomainStartEndBit scoreE-value
Homeobox12417870.74.9e-18
HALZ17922943.38.7e-10

Sequences