Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD009613

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD009613
Description
Chr03_1518,1623,,,1,1623,
Family
Sigma70-like
3D structure (top 5)
2A6H 1RP3 1SIG 1L0O 1L9Z
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.23349
Arabidopsis thaliana sigma factor 2 (SIG2) mRNA, nuclear gene encoding chloroplast protein, complete cds /cds=p(15,1739) /gb=AF015543
Hv.20577
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf170f11, mRNA sequence /gb=AK252843
Hv.27771
BJ481686 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves Hordeum vulgare subsp. spontaneum cDNA clone bah61h18 5', mRNA sequence /clone=bah61h18 /clone_end=5' /gb=BJ481686
Mtr.9120
EST457795 DSIL Medicago truncatula cDNA clone pDSIL-23E14, mRNA sequence /clone=pDSIL-23E14 /gb=BF520325
Os.27006
J001F01 Oryza sativa mature leaf library induced by M.grisea Oryza sativa cDNA clone J001F01, mRNA sequence /clone=J001F01 /gb=BI810206
Os.28459
Oryza sativa Japonica Group cDNA clone:J013054G24, full insert sequence /gb=AK066099
Os.88896
Oryza sativa Japonica Group cDNA clone:001-034-B01, full insert sequence /cds=p(243,1865) /gb=AK060821

Domain Architecture

Sigma70_r2 PF04542 OsIBCD009613
DomainStartEndBit scoreE-value
Sigma70_r230337370.55.7e-18
Sigma70_r337745887.54.4e-23
Sigma70_r447052383.75.8e-22

Sequences