Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD009878

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD009878
Description
Chr03_1871,1962,,,1,1962,
Family
SET
3D structure (top 5)
2R3A 1H3I 3F9X 2RFI 1ML9
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.22
Arabidopsis thaliana CLF (CURLY LEAF); transcription factor (CLF) mRNA, complete cds /cds=p(1,2709) /gb=NM_127902
Hv.20522
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf111g10, mRNA sequence /gb=AK251149
Os.21566
Oryza sativa (indica cultivar-group) mRNA for enhancer of zeste protein (ez1 gene) /cds=p(216,2903) /gb=AJ421722
Os.96671
CI219033 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks after flowering and supermix Oryza sativa (japonica cultivar-group) cDNA clone 039-M068R-D12 3', mRNA sequence /clone=039-M068R-D12 /clone_end=3' /gb=CI219033
Pba.4886
WS02532.B21_C20 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02532_C20 3', mRNA sequence /clone=WS02532_C20 /clone_end=3' /gb=DT486876
Pth.4886
WS02532.B21_C20 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02532_C20 3', mRNA sequence /clone=WS02532_C20 /clone_end=3' /gb=DT486876
Pth.5102
WS0256.B21_F07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0256_F07 3', mRNA sequence /clone=WS0256_F07 /clone_end=3' /gb=CV245041
Ptp.6029
UL90TA12 Populus leaf cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU811921
Sbi.7196
POL1_41_A10.g1_A002 Pollen Sorghum bicolor cDNA clone POL1_41_A10_A002 5', mRNA sequence /clone=POL1_41_A10_A002 /clone_end=5' /gb=CF487051 /gi=34515920

Domain Architecture

SET PF00856 OsIBCD009878
DomainStartEndBit scoreE-value
SET499626148.12.4e-41

Sequences