Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD010133

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD010133
Description
Chr03_2232,3234,,,1,3234,
Family
Jumonji
3D structure (top 5)
2QFI 3BYP
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.43449
Arabidopsis thaliana cation efflux family protein / metal tolerance protein, putative (MTPc1) (AT2G47830) mRNA, complete cds /cds=p(42,1457) /gb=NM_130350
Hv.20135
HT06K09r HT Hordeum vulgare subsp. vulgare cDNA clone HT06K09 5-PRIME, mRNA sequence /clone=HT06K09 /clone_end=5' /gb=CA012854
Os.5672
Oryza sativa Japonica Group cDNA, clone: J100081J07, full insert sequence /gb=AK289253
Ppa.13113
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_165737) mRNA, complete cds /cds=p(96,2768) /gb=XM_001767543
Ppa.7288
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_223289) mRNA, complete cds /cds=p(329,1945) /gb=XM_001779250
Pth.1590
WS02514.B21.1_A09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02514_A09 3', mRNA sequence /clone=WS02514_A09 /clone_end=3' /gb=CV242061
Vvi.2997
CA12EI302IF_E11 Cabernet Sauvignon Leaf - CA12EI Vitis vinifera cDNA clone CA12EI302IF_E11 5', mRNA sequence /clone=CA12EI302IF_E11 /clone_end=5' /gb=CA816066

Domain Architecture

JmjC PF02373 OsIBCD010133
DomainStartEndBit scoreE-value
JmjC6197439.30.0001
Cation_efflux828107281.13.5e-21

Sequences