Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD011532

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD011532
Description
Chr03_4702,468,,,1,468,
Family
HB
3D structure (top 5)
1X2N 1PUF 1LE8 1B72 2DMN
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.28060
Arabidopsis thaliana KNAT1 (BREVIPEDICELLUS 1); transcription factor (KNAT1) mRNA, complete cds /cds=p(357,1553) /gb=NM_116884
Hv.105
Hordeum vulgare knotted class 1 homeodomain protein (k) mRNA, complete cds /cds=p(96,1190) /gb=AF022390
Hv.12878
Hordeum vulgare knotted 1 (kn1) mRNA, complete cds /cds=p(35,1084) /gb=AF544045
Mtr.7182
Medicago truncatula class I KNOX homeobox transcription factor (KNOX2) mRNA, partial cds /cds=p(1,868) /gb=EF128057
Os.151
Oryza sativa Japonica Group OSH1 mRNA for homeobox protein, complete cds /cds=p(1065,2150) /gb=D16507
Pth.17230
WS01223.B21_N06 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01223_N06 3', mRNA sequence /clone=WS01223_N06 /clone_end=3' /gb=CV236360
Ptp.6550
T022A11.3pR Populus shoot meristem cDNA library Populus tremula x Populus tremuloides cDNA clone T022A11 3', mRNA sequence /clone=T022A11 /clone_end=3' /gb=DN489302
Vvi.16658
VV_PEd0017e09.b1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV241384

Domain Architecture

ELK PF03789 OsIBCD011532
DomainStartEndBit scoreE-value
ELK183934.83.1e-07
Homeobox41100-1.30.014

Sequences