Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD011887

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD011887
Description
Chr03_5246,2412,,,1,2412,
Family
HB
3D structure (top 5)
2DMN 1DU6 1B72 1PUF 1X2N
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.16254
Arabidopsis thaliana BLH3 (BLH3) mRNA, complete cds /cds=p(682,2256) /gb=NM_001084358
At.23033
Arabidopsis thaliana BLH1 (embryo sac development arrest 29) (BLH1) mRNA, complete cds /cds=p(544,2586) /gb=NM_001036413
At.74048
Arabidopsis thaliana BLH7 (BELL1-LIKE HOMEODOMAIN 7); DNA binding / transcription factor (BLH7) mRNA, complete cds /cds=p(548,1996) /gb=NM_127194
At.74119
Arabidopsis thaliana clone 142443 mRNA, complete sequence /cds=p(28,1602) /gb=AY085278
Hv.12894
HVSMEg0016O14f Hordeum vulgare pre-anthesis spike EST library HVcDNA0008 (white to yellow anther) Hordeum vulgare subsp. vulgare cDNA clone HVSMEg0016O14f, mRNA sequence /clone=HVSMEg0016O14f /gb=BG344928
Mtr.13534
NF004E06ST1F1000 Developing stem Medicago truncatula cDNA clone NF004E06ST 5', mRNA sequence /clone=NF004E06ST /clone_end=5' /gb=AW688195
Mtr.7013
AC4843 NOLLY Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=DY618467
Os.17301
Oryza sativa Japonica Group cDNA clone:J013134A07, full insert sequence /cds=p(231,1991) /gb=AK068029
Os.21068
Oryza sativa Japonica Group cDNA clone:J013104D06, full insert sequence /gb=AK099829
Os.27062
Oryza sativa Japonica Group cDNA, clone: J043023B19, full insert sequence /gb=AK287476
Os.50442
Oryza sativa Japonica Group cDNA clone:J023088C15, full insert sequence /gb=AK121207
Ptp.6466
G126P33.3pR Populus tension wood cDNA library Populus tremula x Populus tremuloides cDNA clone G126P33 3', mRNA sequence /clone=G126P33 /clone_end=3' /gb=CK093625
Sbi.14265
HS1_50_B01.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone HS1_50_B01_A012 5', mRNA sequence /clone=HS1_50_B01_A012 /clone_end=5' /gb=CD210350 /gi=30945366
Sbi.1439
WOUND1_26_C01.g1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_26_C01_A002 5', mRNA sequence /clone=WOUND1_26_C01_A002 /clone_end=5' /gb=CN145056 /gi=45983936

Domain Architecture

POX PF07526 OsIBCD011887
DomainStartEndBit scoreE-value
POX391538160.35.3e-45
Homeobox5916494.20.0042

Sequences