Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD012103

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD012103
Description
Chr03_5545,1074,,,1,1074,
Family
HB
3D structure (top 5)
2DMN 1X2N 1DU6 1PUF 1LE8
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.28060
Arabidopsis thaliana KNAT1 (BREVIPEDICELLUS 1); transcription factor (KNAT1) mRNA, complete cds /cds=p(357,1553) /gb=NM_116884
Hv.105
Hordeum vulgare knotted class 1 homeodomain protein (k) mRNA, complete cds /cds=p(96,1190) /gb=AF022390
Hv.12878
Hordeum vulgare knotted 1 (kn1) mRNA, complete cds /cds=p(35,1084) /gb=AF544045
Os.151
Oryza sativa Japonica Group OSH1 mRNA for homeobox protein, complete cds /cds=p(1065,2150) /gb=D16507
Os.57551
Oryza sativa mRNA for knotted1-type homeobox protein OSH43, complete cds /cds=p(299,1324) /gb=AB028884
Os.60741
27908rsicef_3991.y1 Oryza sativa cv. PA64s panicle sterile cDNA library Oryza sativa (indica cultivar-group) cDNA 5', mRNA sequence /clone_end=5' /gb=CK008070
Os.84198
CI241214 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sativa (japonica cultivar-group) cDNA clone 042-M066R-A12 3', mRNA sequence /clone=042-M066R-A12 /clone_end=3' /gb=CI241214
Pth.17230
WS01223.B21_N06 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01223_N06 3', mRNA sequence /clone=WS01223_N06 /clone_end=3' /gb=CV236360
Ptp.6550
T022A11.3pR Populus shoot meristem cDNA library Populus tremula x Populus tremuloides cDNA clone T022A11 3', mRNA sequence /clone=T022A11 /clone_end=3' /gb=DN489302

Domain Architecture

KNOX1 PF03790 OsIBCD012103
DomainStartEndBit scoreE-value
KNOX17912377.93.3e-20
KNOX213818972.41.5e-18
ELK21823930.75.3e-06
Homeobox24330160.0028

Sequences