Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD015287

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD015287
Description
Chr04_4160,918,,,1,918,
Family
HSF
3D structure (top 5)
1HKS 3HTS
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.5365
Arabidopsis thaliana HSF4 (HEAT SHOCK FACTOR 4); DNA binding / transcription factor (HSF4) mRNA, complete cds /cds=p(484,1338) /gb=NM_119862
Mtr.10591
EST1225248 MTY Medicago truncatula cDNA clone MTYAF37, mRNA sequence /clone=MTYAF37 /gb=DW016287
Mtr.8663
Medicago truncatula clone MTYFL_FM_FN_FO1G-M-13 unknown mRNA /cds=p(142,1221) /gb=BT053195
Os.27176
Oryza sativa Japonica Group cDNA clone:J033029F08, full insert sequence /gb=AK101182
Os.27716
Oryza sativa (japonica cultivar-group) Os08g0546800 (Os08g0546800) mRNA, complete cds /cds=p(6,1856) /gb=NM_001068958
Os.50642
Oryza sativa (japonica cultivar-group) heat shock factor RHSF1 mRNA, complete cds /cds=p(122,988) /gb=AY344483

Domain Architecture

HSF_DNA-bind PF00447 OsIBCD015287
DomainStartEndBit scoreE-value
HSF_DNA-bind9213159.11.2e-44

Sequences