Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD015308

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD015308
Description
Chr04_4188,4812,,,1,4812,
Family
C3H
3D structure (top 5)
1HQM 1TWF 2A6H 2WAQ 2K0M
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

Os.28119
Oryza sativa Japonica Group cDNA clone:J033123O13, full insert sequence /gb=AK103254
Os.54279
Oryza sativa Japonica Group cDNA clone:002-112-G03, full insert sequence /gb=AK064589
Os.59642
62624rsicek_7141.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa (indica cultivar-group) cDNA 5', mRNA sequence /clone_end=5' /gb=CK055093
Os.93745
NEW_RNG104-G07 Rice mixture of leaf, root, panicle Oryza sativa (japonica cultivar-group) cDNA, mRNA sequence /gb=EE592035
Os.97567
MA_PA64s_02838 Mature embryo cDNA Library of PA64s Oryza sativa Indica Group cDNA 5', mRNA sequence /clone_end=5' /gb=FG955027
Sbi.12084
RHOH1_48_E07.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_48_E07_A002 5', mRNA sequence /clone=RHOH1_48_E07_A002 /clone_end=5' /gb=CN131527 /gi=45960886
Vvi.4670
CAB2SG0001_IaR_D11 Cabernet Sauvignon Berry - CAB2SG Vitis vinifera cDNA clone CAB2SG0001_IaR_D11 3', mRNA sequence /clone=CAB2SG0001_IaR_D11 /clone_end=3' /gb=CB346412

Domain Architecture

RNA_pol_Rpb1_2 PF00623 OsIBCD015308
DomainStartEndBit scoreE-value
RNA_pol_Rpb1_230045892.31.6e-24
RNA_pol_Rpb1_346161179.51.1e-20
RNA_pol_Rpb1_466578322.96e-05
zf-CCCH1368139490.09
WD401400143825.70.00017

Sequences