Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD017376

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD017376
Description
Chr05_2176,2865,,,1,2865,
Family
Jumonji
3D structure (top 5)
2OX0 2W2I
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.26858
Arabidopsis thaliana transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (AT1G08620) mRNA, complete cds /cds=p(1,3552) /gb=NM_100735
At.27326
Arabidopsis thaliana transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (AT1G30810) mRNA, complete cds /cds=p(323,2686) /gb=NM_102818
At.53035
Arabidopsis thaliana MEE27 (maternal effect embryo arrest 27); transcription factor (MEE27) mRNA, complete cds /cds=p(1,2421) /gb=NM_129041
Hv.15767
RUS68B10w HF Hordeum vulgare subsp. vulgare cDNA clone HF14D11, mRNA sequence /clone=HF14D11 /gb=FD523224
Hv.16169
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf124d14, mRNA sequence /gb=AK253132
Hv.27190
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf42k21, mRNA sequence /gb=AK249502
Os.10868
Oryza sativa Japonica Group cDNA clone:J023127H13, full insert sequence /cds=p(200,3916) /gb=AK121381
Pth.16132
F057P19.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F057P19 3', mRNA sequence /clone=F057P19 /clone_end=3' /gb=CK091187
Sbi.8331
RHOH1_36_H01.b3_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_36_H01_A002 3', mRNA sequence /clone=RHOH1_36_H01_A002 /clone_end=3' /gb=CN129603 /gi=45957447

Domain Architecture

JmjN PF02375 OsIBCD017376
DomainStartEndBit scoreE-value
JmjN6010498.12.7e-26
JmjC3014172305.2e-66
zf-C5HC252257583.85.5e-22
FYRN75280467.54.5e-17
FYRC80790275.61.7e-19

Sequences