Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD018681

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD018681
Description
Chr05_4224,1374,,,1,1374,
Family
HSF
3D structure (top 5)
1HKS 3HTS
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.32971
Arabidopsis thaliana HSF1 (ARABIDOPSIS HEAT SHOCK FACTOR 1); DNA binding / transcription factor (HSF1) mRNA, complete cds /cds=p(1,1488) /gb=NM_117884
Hv.9738
HV_CEb0010C13f Hordeum vulgare seedling green leaf EST library HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp. vulgare cDNA clone HV_CEb0010C13f, mRNA sequence /clone=HV_CEb0010C13f /gb=BE216310
Os.18587
Oryza sativa Japonica Group cDNA clone:J033067M16, full insert sequence /gb=AK101824
Os.40018
Oryza sativa spl7 mRNA for spl7 protein, complete cds /cds=p(358,1737) /gb=AB050098
Os.59230
Oryza sativa Japonica Group cDNA clone:J013165J23, full insert sequence /gb=AK072210
Pba.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055
Ppa.16751
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_206139) mRNA, partial cds /cds=p(377,1177) /gb=XM_001758240
Pth.11766
F069P67Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence /gb=BI136536
Pth.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055
Vvi.23635
S9B09290 Ripening Berries (VvS9) Vitis vinifera cDNA clone S9B09290, mRNA sequence /clone=S9B09290 /gb=EE101448

Domain Architecture

HSF_DNA-bind PF00447 OsIBCD018681
DomainStartEndBit scoreE-value
HSF_DNA-bind17185218.51.6e-62

Sequences