Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD019038

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD019038
Description
Chr05_4725,1503,,,1,1503,
Family
Sigma70-like
3D structure (top 5)
1RP3 1SIG 1L0O 2A6H 1L9Z
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.5425
Arabidopsis thaliana SIGE (RNA polymerase sigma subunit E); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor (SIGE) mRNA, complete cds /cds=p(108,1661) /gb=NM_122317
Hv.13889
BJ484953 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves Hordeum vulgare subsp. spontaneum cDNA clone bah56o16 3', mRNA sequence /clone=bah56o16 /clone_end=3' /gb=BJ484953
Os.57417
Oryza sativa Japonica Group cDNA clone:001-201-C12, full insert sequence /gb=AK105697

Domain Architecture

Sigma70_r2 PF04542 OsIBCD019038
DomainStartEndBit scoreE-value
Sigma70_r226734049.41.2e-11
Sigma70_r334342452.91.1e-12
Sigma70_r443648966.31.1e-16

Sequences