Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD019054

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD019054
Description
Chr05_4746,3204,,,1,3204,
Family
Sigma70-like
3D structure (top 5)
1RP3 1SIG 1L0O 2A6H 1L9Z
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.24531
Arabidopsis thaliana unknown protein (AT3G02420) mRNA, complete cds /cds=p(70,1116) /gb=NM_111109
Hv.26891
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf115a15, mRNA sequence /gb=AK251224
Hv.31556
HVSMEm0013I03r2 Hordeum vulgare green seedling (Blumeria infected) cDNA library HVSMEm (HVcDNA0014)2 Hordeum vulgare subsp. vulgare cDNA clone HV__Ea0042M03f, mRNA sequence /clone=HV__Ea0042M03f /gb=GH226324
Mtr.6027
Medicago truncatula clone MTYFT1G-O-1 unknown mRNA /cds=p(51,1097) /gb=BT053614
Os.11298
Oryza sativa Japonica Group cDNA clone:J023099O12, full insert sequence /cds=p(85,1140) /gb=AK099181
Os.21453
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA123A21, full insert sequence /gb=CT829356
Os.25471
Oryza sativa Japonica Group cDNA clone:001-115-C07, full insert sequence /gb=AK063423
Pba.11247
WS02523.B21_A05 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02523_A05 3', mRNA sequence /clone=WS02523_A05 /clone_end=3' /gb=DT483583
Pba.7058
WS02535.B21_A03 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02535_A03 3', mRNA sequence /clone=WS02535_A03 /clone_end=3' /gb=DT487912
Pth.11247
WS02523.B21_A05 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02523_A05 3', mRNA sequence /clone=WS02523_A05 /clone_end=3' /gb=DT483583
Pth.7058
WS02535.B21_A03 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02535_A03 3', mRNA sequence /clone=WS02535_A03 /clone_end=3' /gb=DT487912
Ptp.1687
G101P14.3pR Populus tension wood cDNA library Populus tremula x Populus tremuloides cDNA clone G101P14 3', mRNA sequence /clone=G101P14 /clone_end=3' /gb=CK092941
Sbi.16086
WOUND1_33_B10.b1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_33_B10_A002 3', mRNA sequence /clone=WOUND1_33_B10_A002 /clone_end=3' /gb=CN145455 /gi=45984701
Sbi.8806
ANR1_18_F05.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone ANR1_18_F05_A002 3', mRNA sequence /clone=ANR1_18_F05_A002 /clone_end=3' /gb=CX610366 /gi=57809086
Vvi.1642
WIN0564.C21_H23 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0564_H23 3', mRNA sequence /clone=WIN0564_H23 /clone_end=3' /gb=EC955368

Domain Architecture

Sigma70_r2 PF04542 OsIBCD019054
DomainStartEndBit scoreE-value
Sigma70_r283490340.27.3e-09
Sigma70_r390798960.26.8e-15
Sigma70_r41001105469.51.1e-17

Sequences