Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD019262

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD019262
Description
Chr06_273,3114,,,1,3114,
Family
SET
3D structure (top 5)
1MQB 1YVJ 2I6L 2VUW 3E64
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.26236
Arabidopsis thaliana At1g12580/T12C24_10 mRNA, complete cds /cds=p(250,1818) /gb=AY057692
At.293
Arabidopsis thaliana CPK1 (calcium-dependent protein kinase isoform AK1); calmodulin-dependent protein kinase/ kinase (CPK1) mRNA, complete cds /cds=p(462,2294) /gb=NM_120569
At.32168
Arabidopsis thaliana putative calcium-dependent protein kinase (At5g12180) mRNA, complete cds /cds=p(113,1699) /gb=AY072126
At.53048
Arabidopsis thaliana CPK25 (calcium-dependent protein kinase 25); calmodulin-dependent protein kinase/ kinase (CPK25) mRNA, complete cds /cds=p(1,1563) /gb=NM_129148
At.54915
Arabidopsis thaliana CPK34 (calcium-dependent protein kinase 34); calmodulin-dependent protein kinase/ kinase (CPK34) mRNA, complete cds /cds=p(1,1572) /gb=NM_121941
Hv.18472
HVSMEc0007M19f Hordeum vulgare seedling shoot EST library HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare subsp. vulgare cDNA clone HVSMEc0007M19f, mRNA sequence /clone=HVSMEc0007M19f /gb=BF618778
Os.12665
Oryza sativa Japonica Group cDNA clone:J013153A17, full insert sequence /gb=AK068414
Os.282
Oryza sativa Japonica Group cDNA clone:001-041-E12, full insert sequence /cds=p(321,1976) /gb=AK061881
Os.4465
Oryza sativa Japonica Group cDNA clone:001-007-E08, full insert sequence /cds=p(204,902) /gb=AK058892
Os.44812
Oryza sativa Japonica Group cDNA clone:J033110L01, full insert sequence /gb=AK122004
Os.53349
Oryza sativa Japonica Group cDNA clone:J013164K19, full insert sequence /cds=p(625,2424) /gb=AK072204
Os.78638
Oryza sativa (japonica cultivar-group) Os12g0486600 (Os12g0486600) mRNA, complete cds /cds=p(1,1839) /gb=NM_001073318
Ppa.11687
Physcomitrella patens subsp. patens cpk9 calcium-dependent protein kinase (cpk9) mRNA, complete cds /cds=p(162,1889) /gb=XM_001776355
Ppa.15728
Physcomitrella patens subsp. patens cpk11 calcium-dependent protein kinase (cpk11) mRNA, complete cds /cds=p(1080,2558) /gb=XM_001775124
Ppa.2163
Physcomitrella patens calcium-dependent protein kinase (CPK6) mRNA, complete cds /cds=p(622,2358) /gb=EU050671
Ppa.23379
Physcomitrella patens calcium-dependent protein kinase (CPK11) mRNA, complete cds /cds=p(512,2293) /gb=EU050685
Ppa.5783
Physcomitrella patens calcium-dependent protein kinase (CPK10) mRNA, complete cds /cds=p(107,1744) /gb=EU050680
Ppa.9799
Physcomitrella patens subsp. patens cpk1 calcium-dependent protein kinase (cpk1) mRNA, complete cds /cds=p(333,1982) /gb=XM_001767716

Domain Architecture

Pkinase PF00069 OsIBCD019262
DomainStartEndBit scoreE-value
Pkinase37295324.71.7e-94
SET504801120.45.3e-33

Sequences