Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD019339

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD019339
Description
Chr06_383,927,,,1,927,
Family
HB
3D structure (top 5)
2R5Y 2DA6 1PUF 2DMT 2VI6
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.21112
Arabidopsis thaliana HAT3 (homeobox-leucine zipper protein 3); transcription factor (HAT3) mRNA, complete cds /cds=p(217,1164) /gb=NM_115903
Mtr.17039
EST611139 KVKC Medicago truncatula cDNA clone pKVKC-7D9, mRNA sequence /clone=pKVKC-7D9 /gb=BQ165270
Mtr.5196
AJ498394 MTPOSE Medicago truncatula cDNA clone mt--acc955204c10, mRNA sequence /clone=mt--acc955204c10 /gb=AJ498394
Os.2365
Oryza sativa (indica cultivar-group) homeodomain leucine zipper protein (Hox2) mRNA, complete cds /cds=p(193,1119) /gb=AY206864
Os.37618
CT842783 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa (indica cultivar-group) cDNA clone CONTIG10272, mRNA sequence /clone=CONTIG10272 /gb=CT842783
Os.80523
Oryza sativa Japonica Group cDNA, clone: J065121H01, full insert sequence /gb=AK241196
Pba.11168
WS02528.B21_I15 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02528_I15 3', mRNA sequence /clone=WS02528_I15 /clone_end=3' /gb=DT485554
Pba.4177
WS02553.C21_M03 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_M03 3', mRNA sequence /clone=WS02553_M03 /clone_end=3' /gb=DT493223
Pba.8419
WS02526.BR_D19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02526_D19 5', mRNA sequence /clone=WS02526_D19 /clone_end=5' /gb=DT479554
Ppa.10747
Physcomitrella patens mRNA for homeobox protein PpHB4, complete cds /cds=p(328,810) /gb=AB028075
Ppa.26054
DC945664 ppgs full-length cDNA library; green sporophytes Physcomitrella patens subsp. patens cDNA clone ppgs8n05 3', mRNA sequence /clone=ppgs8n05 /clone_end=3' /gb=DC945664
Pth.11168
WS02528.B21_I15 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02528_I15 3', mRNA sequence /clone=WS02528_I15 /clone_end=3' /gb=DT485554
Pth.4177
WS02553.C21_M03 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_M03 3', mRNA sequence /clone=WS02553_M03 /clone_end=3' /gb=DT493223
Pth.8419
WS02526.BR_D19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02526_D19 5', mRNA sequence /clone=WS02526_D19 /clone_end=5' /gb=DT479554
Sbi.1150
ETH1_26_H05.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA clone ETH1_26_H05_A002 5', mRNA sequence /clone=ETH1_26_H05_A002 /clone_end=5' /gb=CD432200 /gi=31347843

Domain Architecture

Homeobox PF00046 OsIBCD019339
DomainStartEndBit scoreE-value
Homeobox11516969.21.3e-17
HALZ17021459.79.8e-15

Sequences