Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD019557

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD019557
Description
Chr06_696,3564,,,1,3564,
Family
C3H
3D structure (top 5)
1MQB 1UA2 1X8B 2WEI 3E3P
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.12692
Arabidopsis thaliana At2g29580/F16P2.4 mRNA, complete cds /cds=p(89,1540) /gb=AF428354
At.25418
Arabidopsis thaliana zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (AT1G07360) mRNA, complete cds /cds=p(71,1516) /gb=NM_100610
Hv.2670
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf68d17, mRNA sequence /gb=AK250256
Hv.3129
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf150p22, mRNA sequence /gb=AK252312
Os.17507
Oryza sativa Japonica Group cDNA clone:J013067M02, full insert sequence /cds=p(67,1515) /gb=AK120360
Os.39294
Oryza sativa Japonica Group cDNA clone:J013038H19, full insert sequence /cds=p(1609,2373) /gb=AK111541
Os.49892
Oryza sativa Japonica Group cDNA clone:001-130-E06, full insert sequence /gb=AK119296
Os.53208
Oryza sativa Japonica Group cDNA clone:J023090B05, full insert sequence /gb=AK071360
Os.5565
Oryza sativa Japonica Group cDNA clone:J023003O14, full insert sequence /gb=AK111689
Os.70575
Oryza sativa (japonica cultivar-group) Os04g0517700 (Os04g0517700) mRNA, complete cds /cds=p(1,2532) /gb=NM_001059857
Os.78774
Oryza sativa (japonica cultivar-group) Os06g0170100 (Os06g0170100) mRNA, complete cds /cds=p(1,2136) /gb=NM_001063465
Ppa.5833
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_185655) mRNA, complete cds /cds=p(227,1651) /gb=XM_001766453
Vvi.19286
C1G03878 Mixture of buds, little clusters and fruits (C1) Vitis vinifera cDNA clone C1G03878, mRNA sequence /clone=C1G03878 /gb=EE062734

Domain Architecture

zf-CCCH PF00642 OsIBCD019557
DomainStartEndBit scoreE-value
zf-CCCH15818316.40.0093
RRM_123029655.81.5e-13
Pkinase8871145108.12.8e-29
Pkinase_Tyr8871133112.61.2e-30

Sequences