Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD021036

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD021036
Description
Chr06_3289,1149,,,1,1149,
Family
HSF
3D structure (top 5)
1HKS 3HTS
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.25607
Arabidopsis thaliana AT-HSFC1 (Arabidopsis thaliana heat shock transcription factor C1); DNA binding / transcription factor (AT-HSFC1) mRNA, complete cds /cds=p(390,1382) /gb=NM_113363
Hv.16134
HV10O05r HV Hordeum vulgare subsp. vulgare cDNA clone HV10O05 5-PRIME, mRNA sequence /clone=HV10O05 /clone_end=5' /gb=CA019131
Hv.20818
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf61l22, mRNA sequence /gb=AK248538
Hv.30886
HC04G06 HC Hordeum vulgare subsp. vulgare cDNA clone HC04G06 similar to NP_189095.1| (NM_113363) heat shock transcription factor HSF1, putative [Arabidopsis thaliana] gi|9294046|dbj|BAB02003.1| (AB020746) contains similarity to heat shock trans, mRNA ...
Os.11250
Oryza sativa Japonica Group cDNA clone:002-105-A02, full insert sequence /cds=p(72,968) /gb=AK106488
Os.40015
Oryza sativa Japonica Group cDNA clone:J023019J23, full insert sequence /gb=AK069479
Os.74142
Oryza sativa (japonica cultivar-group) Os06g0553100 (Os06g0553100) mRNA, complete cds /cds=p(1,837) /gb=NM_001064378
Sbi.11798
DG1_86_D02.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence /gb=BE362344
Vvi.12796
sT7aVVM015L11038 VVM Vitis vinifera cDNA clone VVM015L11038 5' similar to emb_CAN72162.1 hypothetical protein [Vitis vinifera]. Expect = 2e-115, mRNA sequence /clone=VVM015L11038 /clone_end=5' /gb=FC066410

Domain Architecture

HSF_DNA-bind PF00447 OsIBCD021036
DomainStartEndBit scoreE-value
HSF_DNA-bind10176151.91.7e-42

Sequences