Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD021436

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD021436
Description
Chr06_3897,1410,,,1,1410,
Family
ARID
3D structure (top 5)
1C20 2EQY 2JRZ 1IG6 2CXY
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.12107
Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL24-09-F03 /cds=p(181,2541) /gb=AK176382
At.34646
Arabidopsis thaliana ARID/BRIGHT DNA-binding domain-containing protein (AT1G76510) mRNA, complete cds /cds=p(230,1534) /gb=NM_106301
At.43690
Arabidopsis thaliana ARID/BRIGHT DNA-binding domain-containing protein (AT1G20910) mRNA, complete cds /cds=p(176,1372) /gb=NM_101944
Hv.19293
AV942153 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves Hordeum vulgare subsp. spontaneum cDNA clone bah39l11 5', mRNA sequence /clone=bah39l11 /clone_end=5' /gb=AV942153
Hv.5829
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf46h03, mRNA sequence /gb=AK249562
Mtr.2072
s13dNF98D03MJ027_246106 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago truncatula cDNA, mRNA sequence /gb=CX530035
Mtr.21903
MEUAB56TR JCVI-MT2 Medicago truncatula cDNA 3', mRNA sequence /clone_end=3' /gb=GE349415
Os.12814
Oryza sativa Japonica Group cDNA clone:J013170P10, full insert sequence /cds=p(442,1827) /gb=AK099075
Os.54897
Oryza sativa Japonica Group cDNA clone:002-121-B09, full insert sequence /gb=AK107036
Pba.4335
WS0253.B21_F24 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0253_F24 3', mRNA sequence /clone=WS0253_F24 /clone_end=3' /gb=CV243974
Ppa.226
Physcomitrella patens subsp. patens ARID/BRIGHT DNA-binding domain-containing protein (ARID1503) mRNA, partial cds /cds=p(1,897) /gb=XM_001770901
Ppa.443
Physcomitrella patens subsp. patens ARID/BRIGHT DNA-binding domain-containing protein (ARID1502) mRNA, complete cds /cds=p(1,987) /gb=XM_001764103
Pth.11032
Populus trichocarpa clone WS01227_N11 /gb=EF147115
Pth.4335
WS0253.B21_F24 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0253_F24 3', mRNA sequence /clone=WS0253_F24 /clone_end=3' /gb=CV243974
Ptp.3438
T105G08 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU837784
Vvi.3347
WIN0526.C21_E06 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0526_E06 3', mRNA sequence /clone=WIN0526_E06 /clone_end=3' /gb=EC942591
Vvi.4028
S2B24047 Buds (VvS2) Vitis vinifera cDNA clone S2B24047, mRNA sequence /clone=S2B24047 /gb=EE080310

Domain Architecture

ARID PF01388 OsIBCD021436
DomainStartEndBit scoreE-value
ARID16127723.18.4e-07

Sequences