Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD021908

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD021908
Description
Chr06_4607,771,,,1,771,
Family
HB
3D structure (top 5)
1NK2 2E1O 2CUE 1JGG 2DMQ
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

Mtr.1441
Medicago truncatula clone MTYFD_FE_FF_FG1G-H-17 unknown mRNA /cds=p(54,866) /gb=BT052694
Os.4605
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120M16, full insert sequence /gb=CT832945
Os.95461
Oryza sativa Indica Group hox18 (hox18) mRNA, partial cds /cds=p(1,434) /gb=EF555539
Pba.11168
WS02528.B21_I15 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02528_I15 3', mRNA sequence /clone=WS02528_I15 /clone_end=3' /gb=DT485554
Ppa.10747
Physcomitrella patens mRNA for homeobox protein PpHB4, complete cds /cds=p(328,810) /gb=AB028075
Pth.11168
WS02528.B21_I15 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02528_I15 3', mRNA sequence /clone=WS02528_I15 /clone_end=3' /gb=DT485554
Vvi.17363
WIN0812.C21_C24 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0812_C24 3', mRNA sequence /clone=WIN0812_C24 /clone_end=3' /gb=EC961649
Vvi.8463
WIN061.C21_D09 Cab Sauv seed normalized (WIN06) Vitis vinifera cDNA clone WIN061_D09 3', mRNA sequence /clone=WIN061_D09 /clone_end=3' /gb=EC956931

Domain Architecture

Homeobox PF00046 OsIBCD021908
DomainStartEndBit scoreE-value
Homeobox11516954.24.5e-13
HALZ17021453.95.4e-13

Sequences