Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD024923

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD024923
Description
Chr08_320,2358,,,1,2358,
Family
HB
3D structure (top 5)
1AU7 2CUF 2DMS 1FJL 1PUF
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.19179
Arabidopsis thaliana homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (AT1G05230) mRNA, complete cds /cds=p(316,2481) /gb=NM_179265
At.21209
Arabidopsis thaliana HDG1 (HOMEODOMAIN GLABROUS1); DNA binding / transcription factor (HDG1) mRNA, complete cds /cds=p(162,2588) /gb=NM_115979
At.24442
Arabidopsis thaliana ANL2 (ANTHOCYANINLESS 2) (ANL2) mRNA, complete cds /cds=p(406,2118) /gb=NM_001125435
At.2706
Arabidopsis thaliana ATML1 (MERISTEM LAYER 1); DNA binding (ATML1) mRNA, complete cds /cds=p(467,2755) /gb=NM_001036615
At.38083
Arabidopsis thaliana DNA binding / transcription factor (AT2G32370) mRNA, complete cds /cds=p(240,2417) /gb=NM_128796
At.4047
Arabidopsis thaliana PDF2 (PROTODERMAL FACTOR2); DNA binding / transcription factor (PDF2) mRNA, complete cds /cds=p(449,2680) /gb=NM_116727
Hv.26642
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf24d09, mRNA sequence /gb=AK249246
Os.11988
Oryza sativa Japonica Group cDNA clone:J013120I03, full insert sequence /gb=AK120496
Os.12432
Oryza sativa Japonica Group Roc2 mRNA for GL2-type homeodomain protein, complete cds /cds=p(260,2611) /gb=AB101645
Os.20576
Oryza sativa Japonica Group cDNA, clone: J075197C04, full insert sequence /gb=AK318563
Os.6039
Oryza sativa Japonica Group cDNA clone:J013045A10, full insert sequence /gb=AK111544
Os.8833
Oryza sativa Japonica Group cDNA clone:002-108-E06, full insert sequence /gb=AK112099
Vvi.11868
WIN1121.C21_M07 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1121_M07 3', mRNA sequence /clone=WIN1121_M07 /clone_end=3' /gb=EC984389

Domain Architecture

Homeobox PF00046 OsIBCD024923
DomainStartEndBit scoreE-value
Homeobox12518186.21.1e-22
START301527281.51.7e-81

Sequences