Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD025077

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD025077
Description
Chr08_572,1119,,,1,1119,
Family
Sigma70-like
3D structure (top 5)
1RP3 1SIG 1L0O 2A6H 1L9Z
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.25556
Arabidopsis thaliana SIG2 mRNA for plastid RNA polymerase sigma-subunit, complete cds /cds=p(265,1773) /gb=AB004821
Hv.13585
HDP21E20w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP21E20, mRNA sequence /clone=HDP21E20 /gb=EX588748
Mtr.15977
EST1225753 MTY Medicago truncatula cDNA clone MTYAL66, mRNA sequence /clone=MTYAL66 /gb=DW016792
Os.3407
Oryza sativa Japonica Group mRNA for plastid RNA polymerase sigma factor, complete cds /cds=p(175,1734) /gb=AB005290
Pba.603
V010F07.3pR Populus male catkins cDNA library Populus trichocarpa cDNA clone V010F07 3', mRNA sequence /clone=V010F07 /clone_end=3' /gb=DN491654
Pth.603
V010F07 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU875731
Sbi.69
Sorghum bicolor mRNA for plastid RNA polymerase sigma factor /cds=p(222,1724) /gb=Y14276
Vvi.3158
CAB70003_IIIaR_D09 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70003_IIIaR_D09 3', mRNA sequence /clone=CAB70003_IIIaR_D09 /clone_end=3' /gb=CB980733

Domain Architecture

Sigma70_r2 PF04542 OsIBCD025077
DomainStartEndBit scoreE-value
Sigma70_r213320372.31.6e-18
Sigma70_r320728764.82.8e-16
Sigma70_r430635840.27.6e-09

Sequences