Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD025171

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD025171
Description
Chr08_713,6651,,,1,6651,
Family
SET
3D structure (top 5)
3H6L 2W5Y 1ML9 2RFI 3BO5
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.21894
Arabidopsis thaliana unknown protein (AT4G15180) mRNA, complete cds /cds=p(439,7446) /gb=NM_117606
Mtr.8961
AJ498907 MTPOSE Medicago truncatula cDNA clone mt--acc955210a04, mRNA sequence /clone=mt--acc955210a04 /gb=AJ498907
Os.15854
Oryza sativa (japonica cultivar-group) Os07g0543300 (Os07g0543300) mRNA, complete cds /cds=p(1,3063) /gb=NM_001066442
Os.18478
Oryza sativa Japonica Group cDNA clone:J023150L05, full insert sequence /gb=AK121489
Os.48752
Oryza sativa (japonica cultivar-group) Os11g0512900 (Os11g0512900) mRNA, complete cds /cds=p(1,2880) /gb=NM_001074491
Os.53354
Oryza sativa Japonica Group cDNA clone:J013168G19, full insert sequence /gb=AK072227
Os.80946
AU184105 Rice root Oryza sativa (japonica cultivar-group) cDNA clone R1095, mRNA sequence /clone=R1095 /gb=AU184105
Os.96351
Oryza sativa Japonica Group cDNA, clone: J090069K17, full insert sequence /gb=AK288785
Ptp.2260
C038P76.5pR Populus strain T89 leaves Populus tremula x Populus tremuloides cDNA clone C038P76 5', mRNA sequence /clone=C038P76 /clone_end=5' /gb=CK100499
Sbi.19120
HS1_17_A03.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone HS1_17_A03_A012 5', mRNA sequence /clone=HS1_17_A03_A012 /clone_end=5' /gb=CD213003 /gi=30950653
Vvi.18337
VVG038F01_758613 CabSau Cell Culture (CELu0001) Vitis vinifera cDNA clone VVG038F01 5, mRNA sequence /clone=VVG038F01 /clone_end=5' /gb=DT006849

Domain Architecture

SET PF00856 OsIBCD025171
DomainStartEndBit scoreE-value
SET16621814852.5e-22

Sequences