Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD025557

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD025557
Description
Chr08_1381,1476,,,1,1476,
Family
Sigma70-like
3D structure (top 5)
1RP3 1SIG 1L0O 2A6H 1L9Z
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

Hv.5367
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf134o11, mRNA sequence /gb=AK251756
Os.27634
Oryza sativa Japonica Group cDNA clone:J013170C15, full insert sequence /gb=AK068874
Pba.2302
WS02548.C21_D22 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02548_D22 3', mRNA sequence /clone=WS02548_D22 /clone_end=3' /gb=DT491608
Pth.2302
WS02548.C21_D22 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02548_D22 3', mRNA sequence /clone=WS02548_D22 /clone_end=3' /gb=DT491608
Vvi.2744
WIN0529.C21_I24 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0529_I24 3', mRNA sequence /clone=WIN0529_I24 /clone_end=3' /gb=EC943674

Domain Architecture

Sigma70_r2 PF04542 OsIBCD025557
DomainStartEndBit scoreE-value
Sigma70_r225632683.66.2e-22
Sigma70_r333041169.41.2e-17
Sigma70_r442347680.84.3e-21

Sequences