Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD027242

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD027242
Description
Chr08_4291,3033,,,1,3033,
Family
RB
3D structure (top 5)
2R7G 2QDJ
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.14958
Arabidopsis thaliana RBR1 (RETINOBLASTOMA-RELATED 1) (RBR1) mRNA, complete cds /cds=p(261,3302) /gb=NM_112064
Hv.30827
HVSMEc0001I06f2 Hordeum vulgare seedling shoot (etiolated unstressed) cDNA library HVSMEc (HVcDNA0003)2 Hordeum vulgare subsp. vulgare cDNA clone HV__Ea0014G07r, mRNA sequence /clone=HV__Ea0014G07r /gb=GH213654
Hv.5609
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf83d11, mRNA sequence /gb=AK248360
Mtr.15037
AC0520 NOLLY Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=DY615451
Os.58052
Oryza sativa Japonica Group cDNA, clone: J065187G05, full insert sequence /cds=p(181,3213) /gb=AK241627
Os.87698
Oryza sativa Japonica Group cDNA clone:J023138G19, full insert sequence /gb=AK121431
Pba.3797
F079P63Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence /gb=BI137072
Pba.4988
WS01125.BR_M14 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01125_M14 5', mRNA sequence /clone=WS01125_M14 /clone_end=5' /gb=DT497201
Pth.3797
F079P63Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence /gb=BI137072
Pth.4988
WS01125.BR_M14 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01125_M14 5', mRNA sequence /clone=WS01125_M14 /clone_end=5' /gb=DT497201
Ptp.9142
Populus tremula x Populus tremuloides retinoblastoma-related protein 1 (RB1) mRNA, complete cds /cds=p(224,3331) /gb=AF133675
Vvi.11678
WIN015.B21_N01 Cab Sauv pericarp non-normalized (WIN01) Vitis vinifera cDNA clone WIN015_N01 3', mRNA sequence /clone=WIN015_N01 /clone_end=3' /gb=EC922161
Vvi.17405
S5B02463 Fruits 7-9 mm treated with GA3 (VvS5) Vitis vinifera cDNA clone S5B02463, mRNA sequence /clone=S5B02463 /gb=EE086681

Domain Architecture

RB_A PF01858 OsIBCD027242
DomainStartEndBit scoreE-value
RB_A4196193573.3e-104
RB_B7318612343.5e-67

Sequences