Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD028528

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD028528
Description
Chr09_1948,1908,,,1,1908,
Family
SET
3D structure (top 5)
2H21 1YW5 1EQ3 2ITK 1J6Y
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.15957
AYAXI10TF pooled cDNA populations Arabidopsis thaliana cDNA, mRNA sequence /gb=EG489012
At.41996
Arabidopsis thaliana At1g14030 mRNA sequence /gb=AY080720
Hv.10712
GCN002E03u GCN Hordeum vulgare cDNA clone GCN002E03 3-PRIME, mRNA sequence /clone=GCN002E03 /clone_end=3' /gb=DN157454
Hv.24503
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf157b17, mRNA sequence /gb=AK252367
Mtr.13626
EST1228287 MTY Medicago truncatula cDNA clone MTYBH62, mRNA sequence /clone=MTYBH62 /gb=DW019326
Mtr.17803
AC3785 NOLLY Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=DY617646
Os.12380
RECm0188 A normalized whole-life-cycle cDNA library of rice Oryza sativa (indica cultivar-group) cDNA clone BI026D08, BI072H23, BI108L09, EI094E10, BI121B13, BI129N03, BI13 5', mRNA sequence /clone=BI026D08,_BI072H23,_BI108L09,_EI094E10,_BI121B13, _BI129N
Os.75937
Oryza sativa Japonica Group cDNA, clone: J100085N23, full insert sequence /cds=p(47,1534) /gb=AK243615
Ppa.4461
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_194479) mRNA, complete cds /cds=p(60,494) /gb=XM_001777178
Sbi.10249
OV1_18_F10.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence /gb=BG240166
Vvi.2720
VV_PEb07b07.b1 Vitis vinifera cv. perlette LibB Vitis vinifera cDNA, mRNA sequence /gb=EV233286

Domain Architecture

Rotamase PF00639 OsIBCD028528
DomainStartEndBit scoreE-value
Rotamase5314558.62.2e-14
SET200443196.28.2e-56
Rubis-subs-bind466593199.67.9e-57

Sequences