Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD028658

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD028658
Description
Chr09_2139,2301,,,1,2301,
Family
ARID
3D structure (top 5)
2JXJ 1C20 1IG6 2EQY 1KKX
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.36303
Arabidopsis thaliana ARID/BRIGHT DNA-binding domain-containing protein (AT3G43240) mRNA, complete cds /cds=p(303,2546) /gb=NM_114192
Cre.16177
Chlamydomonas reinhardtii DNA binding protein (CHLREDRAFT_186244) mRNA, complete cds /cds=p(147,2336) /gb=XM_001702638
Hv.20573
AV936309 K. Sato unpublished cDNA library, cv. Haruna Nijo adult, heading stage top three leaves Hordeum vulgare subsp. vulgare cDNA clone baal10n23 3', mRNA sequence /clone=baal10n23 /clone_end=3' /gb=AV936309
Mtr.11956
EST608595 GLSD Medicago truncatula cDNA clone pGLSD-30L12, mRNA sequence /clone=pGLSD-30L12 /gb=BQ123019
Mtr.12681
NF105E12IN1F1099 Insect herbivory Medicago truncatula cDNA clone NF105E12IN 5', mRNA sequence /clone=NF105E12IN /clone_end=5' /gb=BI266889
Mtr.9271
EST334404 DSIL Medicago truncatula cDNA clone pDSIL-1M15, mRNA sequence /clone=pDSIL-1M15 /gb=AW775339
Os.22539
Oryza sativa Japonica Group cDNA clone:J013099I15, full insert sequence /cds=p(655,2049) /gb=AK067357
Os.47452
Oryza sativa Japonica Group cDNA clone:J023071G16, full insert sequence /gb=AK070805
Os.52973
Oryza sativa Japonica Group cDNA clone:J023045L20, full insert sequence /gb=AK070207
Os.77817
Oryza sativa Japonica Group cDNA clone:J013050J22, full insert sequence /gb=AK066110
Os.85524
Oryza sativa Japonica Group cDNA, clone: J075110D07, full insert sequence /gb=AK288003
Ptp.11732
X034C11 Populus wood cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU896019
Sbi.8042
RHOH1_28_H04.b1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_28_H04_A002 3', mRNA sequence /clone=RHOH1_28_H04_A002 /clone_end=3' /gb=CN128279 /gi=45955016
Vvi.13806
SBB06988 Inflorescence (VvS11) Vitis vinifera cDNA clone SBB06988, mRNA sequence /clone=SBB06988 /gb=EE104837
Vvi.20422
WIN0516.C21_N06 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0516_N06 3', mRNA sequence /clone=WIN0516_N06 /clone_end=3' /gb=EC937867

Domain Architecture

ARID PF01388 OsIBCD028658
DomainStartEndBit scoreE-value
ARID573695-1.60.00023

Sequences