Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD028858

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD028858
Description
Chr09_2465,792,,,1,792,
Family
HB
3D structure (top 5)
1ZQ3 1B72 1B8I 2CRA 1NK2
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

Os.2364
Oryza sativa Japonica Group cDNA clone:001-127-B05, full insert sequence /gb=AK105484
Os.28034
Oryza sativa Japonica Group cDNA clone:002-116-D05, full insert sequence /cds=p(495,1304) /gb=AK106818
Os.38013
Oryza sativa Japonica Group cDNA clone:J033046N04, full insert sequence /cds=p(287,1222) /gb=AK101522
Os.8598
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120C09, full insert sequence /gb=CT837674
Pba.9592
WS02549.C21_O11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02549_O11 3', mRNA sequence /clone=WS02549_O11 /clone_end=3' /gb=DT492190
Ppa.10911
Physcomitrella patens subsp. patens predicted protein (Pphb7) mRNA, complete cds /cds=p(234,1265) /gb=XM_001753088
Sbi.7425
RHOH1_19_D01.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_19_D01_A002 5', mRNA sequence /clone=RHOH1_19_D01_A002 /clone_end=5' /gb=CN126861 /gi=45952401

Domain Architecture

Homeobox PF00046 OsIBCD028858
DomainStartEndBit scoreE-value
Homeobox379173.47.4e-19
HALZ9213675.12.2e-19

Sequences