Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD029172

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD029172
Description
Chr09_2919,1341,,,1,1341,
Family
HSF
3D structure (top 5)
1HKS 3HTS
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

Hv.13789
HV_CEa0009N10f Hordeum vulgare seedling green leaf EST library HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp. vulgare cDNA clone HV_CEa0009N10f, mRNA sequence /clone=HV_CEa0009N10f /gb=BF264590
Os.11941
Oryza sativa Japonica Group cDNA clone:002-108-F03, full insert sequence /gb=AK106545
Os.27716
Oryza sativa (japonica cultivar-group) Os08g0546800 (Os08g0546800) mRNA, complete cds /cds=p(6,1856) /gb=NM_001068958
Os.50642
Oryza sativa (japonica cultivar-group) heat shock factor RHSF1 mRNA, complete cds /cds=p(122,988) /gb=AY344483
Os.61308
Oryza sativa Japonica Group cDNA, clone: J065120N14, full insert sequence /cds=p(114,1298) /gb=AK241190
Pba.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055
Pth.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055
Sbi.1889
HS1_4_A05.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone HS1_4_A05_A012 5', mRNA sequence /clone=HS1_4_A05_A012 /clone_end=5' /gb=CD204212 /gi=30933027

Domain Architecture

HSF_DNA-bind PF00447 OsIBCD029172
DomainStartEndBit scoreE-value
HSF_DNA-bind37268137.53.9e-38

Sequences