Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD029194

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD029194
Description
Chr09_2951,5340,,,1,5340,
Family
C3H
3D structure (top 5)
2BZE 1V32 1WH2 2Z5S 1UHR
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

Hv.25150
BJ471970 K. Sato unpublished cDNA library, cv. Haruna Nijo adult, heading stage top three leaves Hordeum vulgare subsp. vulgare cDNA clone baal28n18 5', mRNA sequence /clone=baal28n18 /clone_end=5' /gb=BJ471970
Mtr.13307
EST647475 HOGA Medicago truncatula cDNA clone HOGA-32C15, mRNA sequence /clone=HOGA-32C15 /gb=CB894683
Os.13470
CI118773 Oryza sativa (japonica cultivar-group) supermix Oryza sativa (japonica cultivar-group) cDNA clone 024-M010R-C06 3', mRNA sequence /clone=024-M010R-C06 /clone_end=3' /gb=CI118773
Os.52012
Oryza sativa Japonica Group cDNA clone:002-117-A04, full insert sequence /gb=AK119565
Os.81148
CR281400 Oryza sativa library (Han B) Oryza sativa cDNA clone y714d11p5, mRNA sequence /clone=y714d11p5 /gb=CR281400
Os.82116
OSIIEb05F08.r OSIIEb Oryza sativa (indica cultivar-group) cDNA clone OSIIEb05F08 3', mRNA sequence /clone=OSIIEb05F08 /clone_end=3' /gb=CB629246
Os.83807
CI258151 Oryza sativa (japonica cultivar-group) same as Lib 23(supermix) Oryza sativa (japonica cultivar-group) cDNA clone 045-M035R-A08 3', mRNA sequence /clone=045-M035R-A08 /clone_end=3' /gb=CI258151
Os.86087
NEW_RNG123-D03 Rice mixture of leaf, root, panicle Oryza sativa (japonica cultivar-group) cDNA, mRNA sequence /gb=EE590805
Os.96422
SSH001438 Salt stress SSH library Oryza sativa (indica cultivar-group) cDNA, mRNA sequence /gb=EX451381
Sbi.11090
DG1_7_G08.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence /gb=AW677423

Domain Architecture

SWIB PF02201 OsIBCD029194
DomainStartEndBit scoreE-value
SWIB68275798.81.7e-26
Plus-38219281521.6e-42
GYF1158121340.46.5e-09
zf-CCCH1681170721.70.0018

Sequences