Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD031181

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD031181
Description
Chr10_2866,5046,,,1,5046,
Family
C3H
3D structure (top 5)
2BZE 1V32 1WH2 2Z5S 1UHR
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

Hv.13940
HVSMEf0017E12f Hordeum vulgare seedling root EST library HVcDNA0007 (Etiolated and unstressed) Hordeum vulgare subsp. vulgare cDNA clone HVSMEf0017E12f, mRNA sequence /clone=HVSMEf0017E12f /gb=BF258981
Hv.25150
BJ471970 K. Sato unpublished cDNA library, cv. Haruna Nijo adult, heading stage top three leaves Hordeum vulgare subsp. vulgare cDNA clone baal28n18 5', mRNA sequence /clone=baal28n18 /clone_end=5' /gb=BJ471970
Mtr.13307
EST647475 HOGA Medicago truncatula cDNA clone HOGA-32C15, mRNA sequence /clone=HOGA-32C15 /gb=CB894683
Os.46787
Oryza sativa Japonica Group cDNA clone:001-020-C06, full insert sequence /gb=AK060521
Os.78568
Oryza sativa (japonica cultivar-group) Os10g0511800 (Os10g0511800) mRNA, complete cds /cds=p(1,2118) /gb=NM_001071576
Os.86087
NEW_RNG123-D03 Rice mixture of leaf, root, panicle Oryza sativa (japonica cultivar-group) cDNA, mRNA sequence /gb=EE590805
Os.96422
SSH001438 Salt stress SSH library Oryza sativa (indica cultivar-group) cDNA, mRNA sequence /gb=EX451381

Domain Architecture

AT_hook PF02178 OsIBCD031181
DomainStartEndBit scoreE-value
AT_hook253714.20.083
SWIB27735275.12.3e-19
Plus-3413520197.23.9e-56
GYF71476732.51.5e-06
zf-CCCH1657168113.80.02

Sequences