Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD031470

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD031470
Description
Chr10_3279,936,,,1,936,
Family
HB
3D structure (top 5)
1AU7 2DMU 1ZQ3 2VI6 2DJN
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.21112
Arabidopsis thaliana HAT3 (homeobox-leucine zipper protein 3); transcription factor (HAT3) mRNA, complete cds /cds=p(217,1164) /gb=NM_115903
At.24419
Arabidopsis thaliana heomeobox protein (HAT4) mRNA, complete cds /cds=p(202,1056) /gb=M90394
At.25127
Arabidopsis thaliana HAT2; transcription factor (HAT2) mRNA, complete cds /cds=p(263,1114) /gb=NM_124108
At.44957
20-L022147-065-007-D03-SeLA MPIZ-ADIS-065f Arabidopsis thaliana cDNA clone 007-D03, mRNA sequence /clone=007-D03 /gb=DR751659
Mtr.1519
Medicago truncatula clone MTYF9_FA_FB_FC1G-F-12 unknown mRNA /cds=m(276,1166) /gb=BT052129
Mtr.17039
EST611139 KVKC Medicago truncatula cDNA clone pKVKC-7D9, mRNA sequence /clone=pKVKC-7D9 /gb=BQ165270
Mtr.5196
AJ498394 MTPOSE Medicago truncatula cDNA clone mt--acc955204c10, mRNA sequence /clone=mt--acc955204c10 /gb=AJ498394
Os.23861
Oryza sativa Japonica Group cDNA clone:J033110O17, full insert sequence /cds=p(140,883) /gb=AK122006
Os.4605
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120M16, full insert sequence /gb=CT832945
Os.80523
Oryza sativa Japonica Group cDNA, clone: J065121H01, full insert sequence /gb=AK241196
Pba.11168
WS02528.B21_I15 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02528_I15 3', mRNA sequence /clone=WS02528_I15 /clone_end=3' /gb=DT485554
Pba.4177
WS02553.C21_M03 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_M03 3', mRNA sequence /clone=WS02553_M03 /clone_end=3' /gb=DT493223
Pba.8419
WS02526.BR_D19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02526_D19 5', mRNA sequence /clone=WS02526_D19 /clone_end=5' /gb=DT479554
Pth.11168
WS02528.B21_I15 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02528_I15 3', mRNA sequence /clone=WS02528_I15 /clone_end=3' /gb=DT485554
Pth.15578
Populus trichocarpa clone WS0122_O02 unknown mRNA /cds=p(72,1196) /gb=EF147352
Pth.4177
WS02553.C21_M03 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_M03 3', mRNA sequence /clone=WS02553_M03 /clone_end=3' /gb=DT493223
Pth.8419
WS02526.BR_D19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02526_D19 5', mRNA sequence /clone=WS02526_D19 /clone_end=5' /gb=DT479554
Sbi.11595
GABR1_1_C05.g1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_1_C05_A002 5', mRNA sequence /clone=GABR1_1_C05_A002 /clone_end=5' /gb=CX612281 /gi=57811001
Vvi.17363
WIN0812.C21_C24 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0812_C24 3', mRNA sequence /clone=WIN0812_C24 /clone_end=3' /gb=EC961649

Domain Architecture

HD-ZIP_N PF04618 OsIBCD031470
DomainStartEndBit scoreE-value
HD-ZIP_N5138270.92.7e-78
Homeobox157211676.4e-17
HALZ21225680.84.5e-21

Sequences