Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD033946

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD033946
Description
Chr12_293,2292,,,1,2292,
Family
SET
3D structure (top 5)
3FDE 2PB7 3H6L 1ML9 2R3A
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

Hv.2567
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf52h10, mRNA sequence /gb=AK249824
Hv.29295
AL506577 Hordeum vulgare Barke developing caryopsis (3.-15.DAP) Hordeum vulgare subsp. vulgare cDNA clone HY03J09T 5', mRNA sequence /clone=HY03J09 /clone_end=5' /gb=AL506577
Os.11922
Oryza sativa Japonica Group cDNA clone:J023004N15, full insert sequence /cds=p(280,2298) /gb=AK069035
Os.3123
Oryza sativa Japonica Group cDNA clone:001-026-A12, full insert sequence /gb=AK059336
Os.35901
Oryza sativa Japonica Group cDNA clone:J013002H03, full insert sequence /gb=AK065227
Os.97866
Oryza sativa Japonica Group cDNA clone:J033092A08, full insert sequence /cds=p(393,2834) /gb=AK102379

Domain Architecture

zf-Tim10_DDP PF02953 OsIBCD033946
DomainStartEndBit scoreE-value
zf-Tim10_DDP127772.71.2e-18
YDG_SRA300453220.53.9e-63
Pre-SET480580111.33e-30
SET582738154.33.4e-43

Sequences