Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD034558

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD034558
Description
Chr12_1286,1599,,,1,1599,
Family
C3H
3D structure (top 5)
1M9O 2CQE 2E5S 2RHK 2D9N
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

Hv.21522
AV918456 K. Sato unpublished cDNA library, cv. Haruna Nijo germination shoots Hordeum vulgare subsp. vulgare cDNA clone bags21c02 3', mRNA sequence /clone=bags21c02 /clone_end=3' /gb=AV918456
Os.14312
Oryza sativa (japonica cultivar-group) Os12g0278800 (Os12g0278800) mRNA, complete cds /cds=p(132,1721) /gb=NM_001073101
Sbi.9737
OX1_36_F07.b1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_36_F07_A002 3', mRNA sequence /clone=OX1_36_F07_A002 /clone_end=3' /gb=CN140448 /gi=45976430
Vvi.8494
WIN012.BR_A13 Cab Sauv pericarp non-normalized (WIN01) Vitis vinifera cDNA clone WIN012_A13 5', mRNA sequence /clone=WIN012_A13 /clone_end=5' /gb=EC920688

Domain Architecture

zf-CCCH PF00642 OsIBCD034558
DomainStartEndBit scoreE-value
zf-CCCH10913534.83.2e-07
zf-CCCH24126730.17.8e-06
zf-CCCH28931543.38.4e-10
zf-CCCH437463283.6e-05
zf-CCCH481507322.1e-06

Sequences