Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD034663

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD034663
Description
Chr12_1457,1188,,,1,1188,
Family
C3H
3D structure (top 5)
1M9O 2E5S 2CQE 2RHK 2RPP
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.21711
Arabidopsis thaliana ZFN3 (ZINC FINGER PROTEIN 3); nucleic acid binding (ZFN3) mRNA, complete cds /cds=p(375,1439) /gb=NM_203061
At.23706
Arabidopsis thaliana ZFN1 (ZINC FINGER PROTEIN 1); nucleic acid binding (ZFN1) mRNA, complete cds /cds=p(274,1467) /gb=NM_111151
Hv.12900
HVSMEn0019K14f Hordeum vulgare rachis EST library HVcDNA0015 (normal) Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0019K14f, mRNA sequence /clone=HVSMEn0019K14f /gb=BI959434
Mtr.10625
EST1225273 MTY Medicago truncatula cDNA clone MTYAF64, mRNA sequence /clone=MTYAF64 /gb=DW016312
Os.12914
Oryza sativa (japonica cultivar-group) Os11g0472000 (Os11g0472000) mRNA, partial cds /cds=p(291,1535) /gb=NM_001074410
Os.14912
Oryza sativa Japonica Group cDNA clone:J013001J05, full insert sequence /cds=p(183,1547) /gb=AK111511
Os.19086
Oryza sativa Japonica Group cDNA clone:002-110-B05, full insert sequence /gb=AK112102

Domain Architecture

zf-CCCH PF00642 OsIBCD034663
DomainStartEndBit scoreE-value
zf-CCCH679341.23.7e-09
zf-CCCH11213842.91.1e-09
zf-CCCH1581838.80.096
zf-CCCH26028646.49.8e-11
zf-CCCH30633245.51.8e-10

Sequences