Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD041390

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD041390
Description
Chr05_4184,768,,,1,768,
Family
C3H
3D structure (top 5)
3D2Q 2RPP 1M9O 2E5S 3D2N
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.12895
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT2G19810) mRNA, complete cds /cds=p(107,1186) /gb=NM_127539
At.43010
Arabidopsis thaliana At1g03790 mRNA for unknown protein, complete cds, clone: RAFL16-76-P06 /cds=p(65,1246) /gb=AK117219
Mtr.11645
NF111B08PL1F1073 Phosphate starved leaf Medicago truncatula cDNA clone NF111B08PL 5', mRNA sequence /clone=NF111B08PL /clone_end=5' /gb=BI264045
Os.20244
Oryza sativa Japonica Group cDNA clone:J023119N23, full insert sequence /cds=p(113,1273) /gb=AK100770
Os.29084
Oryza sativa Japonica Group cDNA clone:002-169-F02, full insert sequence /cds=p(56,733) /gb=AK110661
Os.31975
Oryza sativa Japonica Group cDNA clone:002-102-F01, full insert sequence /gb=AK106392
Os.87719
Oryza sativa Japonica Group cDNA clone:002-140-H10, full insert sequence /cds=p(83,850) /gb=AK108249
Pth.3311
Populus trichocarpa clone WS01117_K24 unknown mRNA /cds=p(46,1200) /gb=EF144742

Domain Architecture

zf-CCCH PF00642 OsIBCD041390
DomainStartEndBit scoreE-value
zf-CCCH9912724.90.00029

Sequences