Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: OsIBCD042941

Identification

Species:
Oryza sativa subsp. indica
Gene model
OsIBCD042941
Description
Chr07_2007,2055,,,1,2055,
Family
SET
3D structure (top 5)
2R3A 1ML9 3F9X 2RFI 1MVH
PDB entry:

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.12115
Arabidopsis thaliana SUVH2 (SU(VAR)3-9 HOMOLOG 2) (SUVH2) mRNA, complete cds /cds=p(115,2070) /gb=NM_128889
At.3118
Arabidopsis thaliana SUVH9 (SU(VAR)3-9 HOMOLOG 9); histone-lysine N-methyltransferase/ zinc ion binding (SUVH9) mRNA, complete cds /cds=p(400,2352) /gb=NM_001036548
Hv.18209
AV920392 K. Sato unpublished cDNA library, cv. Haruna Nijo germination shoots Hordeum vulgare subsp. vulgare cDNA clone bags13m07 3', mRNA sequence /clone=bags13m07 /clone_end=3' /gb=AV920392
Os.26478
Oryza sativa Japonica Group cDNA clone:J013097K17, full insert sequence /cds=p(299,2353) /gb=AK067172
Os.52522
Oryza sativa Japonica Group cDNA clone:J013110N01, full insert sequence /gb=AK067640

Domain Architecture

YDG_SRA PF02182 OsIBCD042941
DomainStartEndBit scoreE-value
YDG_SRA235392277.62.5e-80
Pre-SET422522106.48.6e-29
SET524679115.71.4e-31

Sequences