Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_104.22

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_104.22
Family
HB
3D structure (top 5)
2DMN 1PUF 1B72 1DU6 1X2N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

482564 Score: 1

Arabidopsis thaliana

AT2G35940.1 Score: 1
AT2G35940.2 Score: 1
AT2G35940.3 Score: 1

Oryza sativa subsp. japonica

LOC_Os11g06020.1 Score: 1

Populus trichocarpa

256272 Score: 1

Sorghum bicolor

5056382 Score: 1

Vitis vinifera

GSVIVP00038902001 Score: 1

Zea mays

GRMZM2G158350_P01 Score: 1
GRMZM2G158350_P02 Score: 1
GRMZM2G158350_P03 Score: 1
GRMZM2G158350_P04 Score: 1
GRMZM2G158350_P05 Score: 1
GRMZM2G158350_P06 Score: 1

Expression data

Expressed Sequence Tags

At.16254
Arabidopsis thaliana BLH3 (BLH3) mRNA, complete cds /cds=p(682,2256) /gb=NM_001084358
At.23033
Arabidopsis thaliana BLH1 (embryo sac development arrest 29) (BLH1) mRNA, complete cds /cds=p(544,2586) /gb=NM_001036413
At.50395
Arabidopsis thaliana BLH6 (BELL1-LIKE HOMEODOMAIN 5); DNA binding / transcription factor (BLH6) mRNA, complete cds /cds=p(325,1923) /gb=NM_119627
At.52933
Arabidopsis thaliana BLH5 (BELL1-LIKE HOMEODOMAIN 5); DNA binding / transcription factor (BLH5) mRNA, complete cds /cds=p(1,1296) /gb=NM_128280
At.69176
Arabidopsis thaliana At4g34610 gene, complete cds /cds=p(1,1599) /gb=BT012291
At.74048
Arabidopsis thaliana BLH7 (BELL1-LIKE HOMEODOMAIN 7); DNA binding / transcription factor (BLH7) mRNA, complete cds /cds=p(548,1996) /gb=NM_127194
At.74119
Arabidopsis thaliana clone 142443 mRNA, complete sequence /cds=p(28,1602) /gb=AY085278
Mtr.12934
METAB03TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY474952
Mtr.13534
NF004E06ST1F1000 Developing stem Medicago truncatula cDNA clone NF004E06ST 5', mRNA sequence /clone=NF004E06ST /clone_end=5' /gb=AW688195
Mtr.22349
META209TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY474128
Os.21068
Oryza sativa Japonica Group cDNA clone:J013104D06, full insert sequence /gb=AK099829
Os.27062
Oryza sativa Japonica Group cDNA, clone: J043023B19, full insert sequence /gb=AK287476
Sbi.1439
WOUND1_26_C01.g1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_26_C01_A002 5', mRNA sequence /clone=WOUND1_26_C01_A002 /clone_end=5' /gb=CN145056 /gi=45983936
Vvi.13945
S6B05581 Fruits 7-9 mm (VvS6) Vitis vinifera cDNA clone S6B05581, mRNA sequence /clone=S6B05581 /gb=EE089907
Vvi.6621
CAP0005_IF_G01 Vitis vinifera cv. cabernet sauvignon (Clone 8) Petiole - CAP Vitis vinifera cDNA clone CAP0005_IF_G01 5', mRNA sequence /clone=CAP0005_IF_G01 /clone_end=5' /gb=CF517798

Domain Architecture

POX PF07526 evm.TU.supercontig_104.22
DomainStartEndBit scoreE-value
POX171317257.62.9e-74
Homeobox3664243.40.0056

Sequences