Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_107.29

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_107.29
Family
HSF
3D structure (top 5)
1HKS 3HTS
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

919451 Score: 1

Arabidopsis thaliana

AT5G62020.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g43334.2 Score: 1
LOC_Os08g43334.1 Score: 0.994

Sorghum bicolor

5000270 Score: 1

Expression data

Expressed Sequence Tags

At.24995
Arabidopsis thaliana AT-HSFB2B (Arabidopsis thaliana heat shock transcription factor B2B); transcription factor (AT-HSFB2B) mRNA, complete cds /cds=p(377,1510) /gb=NM_117235
At.49954
Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB79ZF11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) /gb=BX814533
At.5365
Arabidopsis thaliana HSF4 (HEAT SHOCK FACTOR 4); DNA binding / transcription factor (HSF4) mRNA, complete cds /cds=p(484,1338) /gb=NM_119862
At.5973
Arabidopsis thaliana AT-HSFB2A (Arabidopsis thaliana heat shock transcription factor B2A); DNA binding / transcription factor (AT-HSFB2A) mRNA, complete cds /cds=p(124,1023) /gb=NM_125595
Mtr.10591
EST1225248 MTY Medicago truncatula cDNA clone MTYAF37, mRNA sequence /clone=MTYAF37 /gb=DW016287
Mtr.8663
Medicago truncatula clone MTYFL_FM_FN_FO1G-M-13 unknown mRNA /cds=p(142,1221) /gb=BT053195
Os.11941
Oryza sativa Japonica Group cDNA clone:002-108-F03, full insert sequence /gb=AK106545

Domain Architecture

HSF_DNA-bind PF00447 evm.TU.supercontig_107.29
DomainStartEndBit scoreE-value
HSF_DNA-bind10210155.31.8e-43

Sequences