Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_108.60

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_108.60
Family
LOB

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

484553 Score: 1

Arabidopsis thaliana

AT3G27650.1 Score: 1

Populus trichocarpa

641633 Score: 1

Carica papaya

evm.TU.supercontig_108.60 Score: 1
evm.TU.supercontig_19.150 Score: 1

Carica papaya

evm.TU.supercontig_108.60 Score: 1
evm.TU.supercontig_6.411 Score: 1

Zea mays

GRMZM2G118250_P03 Score: 1
GRMZM2G118250_P04 Score: 1
GRMZM2G118250_P05 Score: 1
GRMZM2G118250_P06 Score: 1
GRMZM2G133806_P01 Score: 1
GRMZM2G133806_P03 Score: 1
GRMZM2G133806_P02 Score: 0.989
GRMZM2G133806_P04 Score: 0.989
GRMZM2G133806_P05 Score: 0.989

Expression data

Expressed Sequence Tags

At.27202
Arabidopsis thaliana LBD25 (LOB DOMAIN-CONTAINING PROTEIN 25) (LBD25) mRNA, complete cds /cds=p(186,665) /gb=NM_113681
At.28568
Arabidopsis thaliana LOB (LATERAL ORGAN BOUNDARIES) (LOB) mRNA, complete cds /cds=p(445,1005) /gb=NM_180923
At.74385
Arabidopsis thaliana ASL4 mRNA for ASYMMETRIC LEAVES2-like 4 protein, complete cds /cds=p(290,850) /gb=AB473837
Os.18280
Oryza sativa Japonica Group cDNA clone:001-127-G05, full insert sequence /cds=p(296,1051) /gb=AK105527
Ppa.18639
CAYZ14192.fwd CAYZ Physcomitrella patens subsp. patens Villersexel - regular (L) Physcomitrella patens subsp. patens cDNA clone CAYZ14192 5', mRNA sequence /clone=CAYZ14192 /clone_end=5' /gb=FC383141
Vvi.16411
CAbud0007_IIF_F11 Vitis vinifera cv. cabernet sauvignon (Clone 8) Bud - CABUD Vitis vinifera cDNA clone CAbud0007_IIF_F11 5', mRNA sequence /clone=CAbud0007_IIF_F11 /clone_end=5' /gb=CF513695

Domain Architecture

DUF260 PF03195 evm.TU.supercontig_108.60
DomainStartEndBit scoreE-value
DUF26011111230.54.4e-66

Sequences