Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_112.7

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_112.7
Family
C3H
3D structure (top 5)
1N11 3D9H 2AJA 2VGE 1OY3
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

495985 Score: 1

Arabidopsis thaliana

AT5G58620.1 Score: 1

Micromonas pusilla CCMP1545

67715 Score: 1

Ostreococcus lucimarinus

24342 Score: 1

Ostreococcus tauri

23564 Score: 1

Populus trichocarpa

752023 Score: 1

Selaginella moellendorffii

62212 Score: 1

Vitis vinifera

GSVIVP00024088001 Score: 1

Expression data

Expressed Sequence Tags

At.21697
Arabidopsis thaliana unknown protein (At3g55980) mRNA, complete cds /cds=p(170,1912) /gb=AY056282
At.23950
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT2G41900) mRNA, complete cds /cds=p(317,2467) /gb=NM_129754
At.27663
Arabidopsis thaliana CZF1/ZFAR1; transcription factor (CZF1/ZFAR1) mRNA, complete cds /cds=p(190,1983) /gb=NM_129572
At.49189
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT5G58620) mRNA, complete cds /cds=p(236,2059) /gb=NM_125249
At.5281
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT5G12850) mRNA, complete cds /cds=p(261,2381) /gb=NM_121288
Hv.23976
HVSMEc0016D15f Hordeum vulgare seedling shoot EST library HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare subsp. vulgare cDNA clone HVSMEc0016D15f, mRNA sequence /clone=HVSMEc0016D15f /gb=BG310058
Mtr.12130
EST646389 HOGA Medicago truncatula cDNA clone HOGA-28M8, mRNA sequence /clone=HOGA-28M8 /gb=CB893597
Os.74292
Oryza sativa (japonica cultivar-group) Os03g0698800 (Os03g0698800) mRNA, complete cds /cds=p(596,2890) /gb=NM_001057517
Pba.8906
WS01230.BR_D15 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01230_D15 5', mRNA sequence /clone=WS01230_D15 /clone_end=5' /gb=DT473939
Pth.8906
WS01230.BR_D15 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01230_D15 5', mRNA sequence /clone=WS01230_D15 /clone_end=5' /gb=DT473939
Ptp.6284
N036H06 Populus bark cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU815078
Sbi.17965
LG1_292_E12.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence /gb=AW564424
Vvi.19078
VV_PEd01a07.g1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV241477
Vvi.5592
VV_PEd0013h04.g1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV240679

Domain Architecture

Ank PF00023 evm.TU.supercontig_112.7
DomainStartEndBit scoreE-value
Ank7210521.90.0027
Ank10714229.31.6e-05
zf-CCCH26829323.80.00069

Sequences