Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_122.37

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_122.37
Family
HMG
3D structure (top 5)
2YRQ 2GZK 2CO9 2CRJ 1HME
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

489947 Score: 1

Arabidopsis thaliana

AT4G23800.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g15810.1 Score: 1

Physcomitrella patens

210318 Score: 1

Populus trichocarpa

180056 Score: 1

Sorghum bicolor

4817416 Score: 1

Selaginella moellendorffii

73858 Score: 1

Vitis vinifera

GSVIVP00002453001 Score: 1

Zea mays

GRMZM2G060253_P01 Score: 1

Expression data

Expressed Sequence Tags

At.33587
Arabidopsis thaliana high mobility group (HMG1/2) family protein (AT4G11080) mRNA, complete cds /cds=p(1,1341) /gb=NM_117178
At.71059
Arabidopsis thaliana high mobility group (HMG1/2) family protein (AT4G23800) mRNA, complete cds /cds=p(62,1432) /gb=NM_118511
Hv.20482
HDP18O06T HDP Hordeum vulgare subsp. vulgare cDNA clone HDP18O06, mRNA sequence /clone=HDP18O06 /gb=EX574745
Mtr.19040
AC2146 NOLLY Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=DY616611
Os.26082
Oryza sativa Japonica Group cDNA clone:J023045H02, full insert sequence /gb=AK070270
Pth.15723
Populus trichocarpa clone WS0126_H18 unknown mRNA /cds=p(22,720) /gb=EF147989
Ptp.707
A021P78.3pR Hybrid aspen plasmid library Populus tremula x Populus tremuloides cDNA clone A021P78 3', mRNA sequence /clone=A021P78 /clone_end=3' /gb=CK087804
Vvi.15066
CAbud0005_IIF_C03 Vitis vinifera cv. cabernet sauvignon (Clone 8) Bud - CABUD Vitis vinifera cDNA clone CAbud0005_IIF_C03 5', mRNA sequence /clone=CAbud0005_IIF_C03 /clone_end=5' /gb=CF514575
Vvi.5238
CAbud0005_IIR_E12 Vitis vinifera cv. cabernet sauvignon (Clone 8) Bud - CABUD Vitis vinifera cDNA clone CAbud0005_IIR_E12 3', mRNA sequence /clone=CAbud0005_IIR_E12 /clone_end=3' /gb=CF514687

Domain Architecture

HMG_box PF00505 evm.TU.supercontig_122.37
DomainStartEndBit scoreE-value
HMG_box15021758.82.1e-14
HMG_box26633275.22.4e-19
HMG_box39446281.43.3e-21

Sequences