Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_124.1

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_124.1
Family
HSF
3D structure (top 5)
1HKS 3HTS
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

492972 Score: 1

Arabidopsis thaliana

AT4G18880.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g54550.1 Score: 1

Populus trichocarpa

568665 Score: 1

Sorghum bicolor

5002569 Score: 1

Vitis vinifera

GSVIVP00035821001 Score: 1

Zea mays

GRMZM2G118453_P01 Score: 1

Expression data

Expressed Sequence Tags

At.1951
Arabidopsis thaliana AT4g18880/F13C5_50 mRNA, complete cds /cds=p(513,1718) /gb=AY125512
At.32971
Arabidopsis thaliana HSF1 (ARABIDOPSIS HEAT SHOCK FACTOR 1); DNA binding / transcription factor (HSF1) mRNA, complete cds /cds=p(1,1488) /gb=NM_117884
At.5971
Arabidopsis thaliana ATHSFA1E (Arabidopsis thaliana heat shock transcription factor A1E); DNA binding / transcription factor (ATHSFA1E) mRNA, complete cds /cds=p(143,1549) /gb=NM_111169
Mtr.1982
EST639110 MTUS Medicago truncatula cDNA clone MTUS-39G8, mRNA sequence /clone=MTUS-39G8 /gb=CA921392
Mtr.22152
NF106H11DT1F1094 Drought Medicago truncatula cDNA clone NF106H11DT 5', mRNA sequence /clone=NF106H11DT /clone_end=5' /gb=BF636270
Os.59230
Oryza sativa Japonica Group cDNA clone:J013165J23, full insert sequence /gb=AK072210
Pba.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055
Ppa.16751
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_206139) mRNA, partial cds /cds=p(377,1177) /gb=XM_001758240
Ppa.23943
CAYY25595.fwd CAYY Physcomitrella patens subsp. patens Villersexel - regular (H) Physcomitrella patens subsp. patens cDNA clone CAYY25595 5', mRNA sequence /clone=CAYY25595 /clone_end=5' /gb=FC349157
Pth.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055
Ptp.7074
R034B08.3pR Populus root cDNA library Populus tremula x Populus tremuloides cDNA clone R034B08 3', mRNA sequence /clone=R034B08 /clone_end=3' /gb=DN488125
Vvi.23635
S9B09290 Ripening Berries (VvS9) Vitis vinifera cDNA clone S9B09290, mRNA sequence /clone=S9B09290 /gb=EE101448

Domain Architecture

HSF_DNA-bind PF00447 evm.TU.supercontig_124.1
DomainStartEndBit scoreE-value
HSF_DNA-bind12181221.71.9e-63

Sequences